Stains and Cultures Simplified: High-Yield Microbiology
Sep 3, 2025

Scientists and Stains
|
Scientist |
Found/Known as |
|
Joseph Lister |
|
|
Anton Von Leeuwenhoek |
|
|
Ernst Ruska |
Father of electron microscope |
|
Edward Jenner |
|
|
Karry B Mullis |
PCR |
|
Sanger |
Sanger sequencing |
|
H C Gram |
Gram staining |
|
Kleinberger |
L forms (cell wall deficient) |
|
Alexander Fleming |
Penicillin |
|
Barbara Mcclintock |
Transposons (Jumping genes) |
Negative Stains (b/w)

- Staining the background to highlight the organisms
- Cryptococcus causes cryptococcal meningitis Sample : CSF
- Capsulated fungi, that that doesn't take up any colour
- E.g., India ink stain, Nigrosin stain
- Nigrosin
Impregnation Stains

- Deposit stain on the surface of the object to make it look thicker.
- Silver stains- black colour
- For thin structures
- Flagella
- Spirochetes (Eg: Treponema caused syphilis)
- Syphilis patient with Genital ulcers
- Fontana stain- fluid samples
- Levaditi's stain-tissue samples
Differential Stains

- Game positive cell wall contains a lot of peptidoglycans, which retain the dye longer
- Gram-negative cell wall contains lipopolysaccharides (LPS) making it permeable to the
- secondary dye after decolorization (as alchohol/acetone dissolves & washes away all the lipids in bacterial cell wall).
- Poorly gram staining:(gram stain doesn't work well)
- Mycoplasma
- Rickettsia
- Chlamydia
- Spirochetes

Albert Stain

- Albert solution 1
- Malachite Green- Organism
- Toludine blue - stains volutin granules (Metachromatic stain- 2 colours)
- Actual colour- blue
- On sample- purple
- Glacial Acetic acid
- Albert solution 2: Iodine
- Used for Volutin / Babes Ernt granules
- present in C-diphtheria
- located at 2 poles, it is also called bipolar Granules
- Metachromatic Granules-stained by Toluidine blue.
- Stains for Volutin granules:
- Ponder's Stain
- Loeffler methylene Blue (best)
- Albert Stain
- Neisser stain
- Volution granules also seen in Spirillum, Gardnerella, Yersinia pestis, yeast, MTB
Spore Stain

- Spore- resting/ dormant form of bacteria.
- Schaeffer and Fulton stain/ Modified Ashby stain
- Malachite green- spore
- Heat- Mordant
- Water- decolorizer
- Safranin Red- bacteria/organism
MTB Stained with Auramine & Rhodamine dye

A dichroic mirror is used in a fluorescence microscope alongside a strong light source, an excitation filter, and an emission filter.
Blood Agar

- Autoclaved nutrient agar cooled to 50°C.
- 5-10% sterile sheep RBCs
- Made rich by adding blood.
- This is a differential media.
Chocolate Agar

- Autoclaved nutrient agar cooled to 70°C.
- 5-10% sterile sheep RBCs
- More nutritious
- Releases factor: V and X factors
Loeffler's Serum Slope

- Corynebacterium diphtheria
- Aka Klebs Loffler's media
- Enriched media
- time taken to grow - 8 hrs
Lowenstein Jensen Medium: Used for Tuberculosis

- Coagulated hen's egg
- Mineral salt solution
- Asparagine
- Malachite green (inhibit other bacteria)
MacConkey Agar

- Composition: Made of (mnemonic PLANT)
- Peptone
- Lactose (differential medium: lactose fermentation +/-)
- Agar
- Neutral Red (indicator medium): Acts as an indicator
- Fermentation of lactose is pink.
- If no fermentation, looks pale
- Taurocholate (Bile salt) (selective)
CLED

- Cysteine Lactose Electrolyte Deficient.
- On lactose fermentation yellow colonies are formed.
- Indicator: Bromothymol blue
- Better than MacConkey- as it is less inhibitory (non-selective)
Mannitol Salt agar

- Selective Media (has salt- only allows S.aureus grow).
- Mannitol fermentation (differential media)
- Yellow color
- Indicator Media: Phenol Red
Thiosulfate Citrate Bile Salt Sucrose (TCBS)

- Vibrio
- Bile salt makes it selective.
- Indicator: Bromothymol blue.
- Differential media (sucrose fermentation +/-)
Potassium Tellurite Agar

- Black color
- C. diphtheriae
- Enriched media(loeffler serum slope): 8 hours
- Selective media(PTA): 48 hours
Culture Technologies
Streak Culture

- Take a nichrome loop, sterilize and dip the sample
- Start streaking 90 degree.
- To Obtain Pure colonies.
Stroke Culture

- Done in a test tube: Sterilize, pickup sample and streak again
- Stroke culture made in tubes containing agar slope/slant
- Uses: Provide a pure growth for the bacterium of slide agglutination and other diagnostic tests
- Example: Test for urease.
Lawn Culture

- Lawn cultures are obtained by flooding the plate's surface with the bacterium's suspension.
- AKA carpet culture.
- Mainly used for
- Antibiotic sensitivity testing.
- Preparation of bacterial antigens and vaccines.
- Bacteriophage typing.
- Take the sample directly and it put on a culture plate.
Stab Culture

- It is performed by a straight wire, charged with culture material, by puncturing deep inside the agar.
- Straight wire and stab once: put the wire, in and out only once.
- It is used to:
- Demonstrate gelatin liquefaction.
- Oxygen requirement of the bacterium.
- To maintain stock culture for the preservation of bacteria.
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Scientists and Stains
Negative Stains (b/w)
Impregnation Stains
Differential Stains
Albert Stain
Spore Stain
MTB Stained with Auramine & Rhodamine dye
Blood Agar
Chocolate Agar
Loeffler's Serum Slope
Lowenstein Jensen Medium: Used for Tuberculosis
MacConkey Agar
CLED
Mannitol Salt agar
Thiosulfate Citrate Bile Salt Sucrose (TCBS)
Potassium Tellurite Agar
Culture Technologies
Streak Culture
Stroke Culture
Lawn Culture
Stab Culture
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